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General

Full Name Tatsuya Hattori
Contact 6422539@ed.tus.ac.jp
Languages Japanese (Native), English (Beginner)
Interests Bioinformatics, Epigenetics, Data Science, Labolatory automation, 3D print, VR

Experience

  • 2024-04 - present

    Bioinformatics Researcher

    • Daiichi-Sankyo Co., Ltd.
  • 2023

    "Picmobi" (Finalists, Recipient of BIPROGY Award and TomyK Award)

      Division of University Corporate Relations, University of Tokyo
    • The service allows users to simply take a photo of the desired items, and our system coordinates the delivery of the products to a nearby hub.
    • Developed a Web app, an image recognition system for identifying products, and a location tracking system using Raspberry Pi with GNSS sensor-based technology.
  • 2022

    Research Assistant

      Tokyo University of Science
    • Molecular biological experiment (RNA-seq, ATAC-seq, CUT&Tag, WGS, Mouse maintainance)
    • NGS analysis (RNA-seq, ATAC-seq, scRNA-seq, scATAC-seq, CUT&Tag, WGS)
  • 2022 - 2024

    Teaching Assistant

      Tokyo University of Science
    • Bioinformatics
    • Python, Google Colabolatory
  • 2022

    "Mobile trash can"

      Division of University Corporate Relations, University of Tokyo
    • As a leader, developed a trash can that moves in response to voice.
    • Raspberry pi, ROS (Melodic), LiDAR (RPLIDAR), OpenCV, Docker
  • 2020 - 2024

    Bioinformatics Engineer - Amelieff

      Amelieff Corp.
    • Linux, Python, R, AWS, Docker, Researching, NGS analysis (RNA-seq, scRNA-seq, ATAC-seq, scATAC-seq, ChIP-seq, CUT&RUN, Re-seq, GWAS, Metagenomics, Long-read sequencer)
  • 2021

    Bioinformatics Researcher - University of Tokyo

      University of Tokyo
    • Research about single-cell tools.
    • Jupyter Notebook, Google Colabolatory, NGS, Single-cell genomics
  • 2019 - 2020

    iGEM 2020 (Silver Medal)

      International Genetically Engineered Machine Competition
    • Exploring the conversion of nicotine into useful substances using genetic engineering to create a "Nico-friendly" society and prevent ecological damage from cigarette butt litter by adding value to discarded materials.
  • 2019

    iGEM 2019 (Bronze Medal)

      International Genetically Engineered Machine Competition
    • Investigating genetic combinations to enhance E. coli 's radiation resistance by studying Deinococcus radiodurans, with the aim of creating radiation-resistant bacteria.

Education

  • 2022-04 - 2024-03

    Master of Science and Technology in Applied Biological Science - Tokyo University of Science

  • 2018 - 2022

    Bachelor of Science and Technology in Applied Biological Science - Tokyo University of Science

  • 2014 - 2017

    Sendai Daiichi High School

Presentations

    • Poster Presentations:
      1. Hattori, T.*, Watanabe, T., Sasaki, E., Namekawa, S. H., Maezawa, S. Single-cell ATAC-seq reveals stage-specific gene regulatory landscape during mouse spermatogenesis.
        シングルセルゲノミクス研究会2022; August 30-31 2022; みやこめっせ 第二展示場 (京都市)
      2. Hattori, T.*, Watanabe, T., Sasaki, E., Namekawa, S. H., Maezawa, S. Single-cell ATAC-seq reveals stage-specific gene regulatory landscape during mouse spermatogenesis.
        総合研究院データサイエンス医療研究部門・核酸創薬研究部門 合同シンポジウム; September 2022; 東京理科大学 葛飾キャンパス図書館大ホール
      3. Hattori, T., Watanabe, T., Sasaki, E., Namekawa, S. H., Maezawa, S.* "マウス精⼦形成過程における分化運命決定機構の解明"
        NGS EXPO 2022; October 18-19, 2022; Osaka International Convention Center
      4. Hattori, T.*, Watanabe, T., Sasaki, E., Namekawa, S. H., Maezawa, S. Single-cell ATAC-seq reveals stage-specific gene regulatory landscape during mouse spermatogenesis.
        The International Symposium "Totipotency and Germ Cell Development"; November 23-25, 2022; Centennial Hall Kyusyu University School of Medichine, Fukuoka, Japan
      5. Sugiyama R., Otsuka K., Hattori T., Tatara M., Araki K., Iizuka M., Nakata I., Iguchi T., Masai H., Namekawa, S. H., Maezawa, S.* Dynamic nuclear lamina-chromatin interactions during spermatogenesis.
        The International Symposium "Totipotency and Germ Cell Development"; November 23-25, 2022; Centennial Hall Kyusyu University School of Medichine, Fukuoka, Japan
      6. Hattori, T.*, Watanabe, T., Sasaki, E., Namekawa, S. H., Maezawa, S. Single-cell ATAC-seq reveals stage-specific gene regulatory landscape during mouse spermatogenesis.
        The 45th Annual Meeting of the Molecular Biology Society of Japan; 2P-069; November 30 - December 2, 2022; Makuhari Messe International Exhibition Hall
      7. Sugiyama R., Otsuka K., Hattori T., Tatara M., Araki K., Iizuka M., Nakata I., Iguchi T., Masai H., Namekawa, S. H., Maezawa, S.* Dynamic nuclear lamina-chromatin interactions during spermatogenesis.
        The 45th Annual Meeting of the Molecular Biology Society of Japan; 2P-566; November 30 - December 2, 2022; Makuhari Messe International Exhibition Hall
      8. Hattori, T.*, Sugiyama, R., Watanabe, T., Sasaki, E., Namekawa, S. H., Maezawa, S. Single-cell ATAC-seq reveals stage-specific gene regulatory landscape during mouse spermatogenesis.
        総合研究院データサイエンス医療研究部門・デジタルトランスフォーメーション研究部門 合同シンポジウム; October 14, 2023; 東京理科大学 野田キャンパス7号館講堂
      9. Hattori, T.*, Sugiyama, R., Watanabe, T., Sasaki, E., Namekawa, S. H., Maezawa, S. Single-cell ATAC-seq reveals stage-specific gene regulatory landscape during mouse spermatogenesis.
        The 14th International Workshop on Advanced Genomics (14AGW); October 4-6, 2023; Hitotsubashi Hall, National Center of Science Building
      10. Hattori, T.*, Sugiyama, R., Watanabe, T., Sasaki, E., Namekawa, S. H., Maezawa, S. Single-cell ATAC-seq reveals stage-specific gene regulatory landscape during mouse spermatogenesis.
        NGS EXPO 2023; November 15-16, 2023; Osaka International Convention Center
      11. Hattori, T.*, Sugiyama, R., Watanabe, T., Sasaki, E., Namekawa, S. H., Maezawa, S. Single-cell ATAC-seq reveals the important role of transcription factor SOX4 during mouse spermatogenesis.
        The 46th Annual Meeting of the Molecular Biology Society of Japan; December 6-8, 2023; Kobe International Conference Center, Kobe International Exhibition Hall, Kobe Portopia Hotel
      12. Hattori, T., Sugiyama, R., Watanabe, T., Sasaki, E., Namekawa, S. H., Maezawa, S.* Single-cell ATAC-seq reveals stage-specific gene regulatory landscape during mammalian spermatogenesis.
        The 46th Annual Meeting of the Molecular Biology Society of Japan; December 6-8, 2023; Kobe International Conference Center, Kobe International Exhibition Hall, Kobe Portopia Hotel
      13. Hattori, T.*, Sugiyama, R., Watanabe, T., Sasaki, E., Namekawa, S. H., Maezawa, S. Single-cell ATAC-seq reveals stage-specific gene regulatory landscape during mouse spermatogenesis.
        PAGS拡大班会議; December 25-26, 2023; Yokohama

    • Oral Presentations:
      1. Hattori, T.*, Watanabe, T., Sasaki, E., Namekawa, S. H., Maezawa, S. Single-cell ATAC-seq reveals stage-specific gene regulatory landscape during mouse spermatogenesis.
        The 45th Annual Meeting of the Molecular Biology Society of Japan; Workshop(2AW-15-3); November 30 - December 2, 2022; Makuhari Messe International Exhibition Hall
      2. Hattori, T.*, Watanabe, T., Sasaki, E., Namekawa, S. H., Maezawa, S. Single-cell ATAC-seq reveals stage-specific gene regulatory landscape during mouse spermatogenesis.
        The 45th Annual Meeting of the Molecular Biology Society of Japan; Science Pitch(2SP-21-02); November 30 - December 2, 2022; Makuhari Messe International Exhibition Hall
      3. Sugiyama R., Otsuka K., Hattori T., Tatara M., Araki K., Iizuka M., Nakata I., Iguchi T., Masai H., Namekawa, S. H., Maezawa, S.* Dynamic nuclear lamina-chromatin interactions during spermatogenesis.
        The 45th Annual Meeting of the Molecular Biology Society of Japan; Workshop(2PW-15-4); November 30 - December 2, 2022; Makuhari Messe International Exhibition Hall
      4. Hattori, T.*, Watanabe, T., Sasaki, E., Namekawa, S. H., Maezawa, S. マウス精子形成過程における分化運命決定機構の解明
        NGS 発生生物学現場の会 2022; December 7, 2022; 基礎生物学研究所
      5. Hattori, T.*, Sugiyama, R., Watanabe, T., Sasaki, E., Namekawa, S. H., Maezawa, S. Single-cell ATAC-seq reveals stage-specific gene regulatory landscape during mouse spermatogenesis.
        NGS EXPO 2023; November 15-16, 2023; Osaka International Convention Center
      6. Hattori, T.*, Otsuka K., Sugiyama, R., Watanabe, T., Sasaki, E., Namekawa, S. H., Maezawa, S. Single-cell ATAC-seq reveals stage-specific gene regulatory landscape during mouse spermatogenesis.
        生殖ライフスパン若手の会; November 29 - December 1, 2023; Nagoya
      7. Hattori, T.*, Sugiyama, R., Watanabe, T., Sasaki, E., Namekawa, S. H., Maezawa, S. Single-cell ATAC-seq reveals the important role of transcription factor SOX4 during mouse spermatogenesis.
        The 46th Annual Meeting of the Molecular Biology Society of Japan; Science Pitch; December 6-8, 2023; Kobe International Conference Center, Kobe International Exhibition Hall, Kobe Portopia Hotel
      8. Hattori, T., Sugiyama, R., Watanabe, T., Sasaki, E., Namekawa, S. H., Maezawa, S.* Single-cell ATAC-seq reveals the important role of transcription factor SOX4 during mouse spermatogenesis.
        The 46th Annual Meeting of the Molecular Biology Society of Japan; Workshop (2P-151); December 6-8, 2023; Kobe International Conference Center, Kobe International Exhibition Hall, Kobe Portopia Hotel

Skills

Programming Python, R, Bash
Tools Docker, Jupyter, Linux, Git & GitHub, Firebase, Fusion 360, Inkscape, Figma, Canva
Libraries Python : Pandas, NumPy, Matplotlib, Seaborn, PyTorch, Scikit-learn
R : tidyverse, related to bioinformatics
Others Raspberry Pi, 3D printer, Oculus Quest 2, Drones